[PyMOL] "draw" command

PyMOL Testers: 0.99beta07 also contains a new command: "draw" which creates an oversized OpenGL image using the current window. Usage: draw [width, height, antialiasing-level] Examples: draw 1600 will create an 1600-pixel wide image with an aspect ratio equal to that of the current screen.

RE: [PyMOL] vdw volume

Binging, There aren't any volume computations in PyMOL... To set radii, use the alter command *after* loading the molecule alter elem c, vdw=1.9 alter elem n, vdw=1.8 alter elem o, vdw=1.7 rebuild Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist

RE: [PyMOL] surface with vdw > 6

LC, PyMOL's surfacing algorithm current only works well for standard atomic geometries...radii in the 1 - 3 A range, and solvent radii of 1-3 A. Perhaps you can simply scale the problem to fit within that range? Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scienti

Re: [PyMOL] keynote and pymol

I've had the same experience as well. I've found that it works a little better in the newer version. It's not perfect, but my movies do look better than when I use Powerpoint. Dan > From: William Scott > Date: Sat, 4 Jun 2005 22:25:34 -0700 (PDT) > To: > Subject: [PyMOL] keynote and pymol

[PyMOL] surface with vdw > 6

Hello, I would like to represent the surface of a model made of dummy C atoms, but they should have a van der Waals diameter bigger than 6 A. When I increase their vdw above 5.9 (for ex.: alter elem c, vdw=6; rebuild), the surface just disappear. Do I need to change some other parameters? Is it

[PyMOL] vdw volume

Hi, How to get the vdw volume of a selection in pymol and how to set different radii for atoms? Thanks Bingding -- Bingding Huang PhD student Bioinformatics group Biotec & Department of Computing Tazberg 47, 01307 TU Dresden, Germany Tel:0049 351 46340064 (Office) Tel:0049 351 4403368

Re: [PyMOL] keynote and pymol

Hi Rick, I want to join Bill's experience with keynote. What I usually do, is to read the series of pymol pictures into Quicktime Pro and export them as movie (you can save the series of pictures directly as "slide show" without any quality loss; however, such a "movie" often halts for a frac

[PyMOL] Shader Fun & Large System Support

PyMOL Users: If you are lucky enough to own a fancy new OpenGL graphics card that supports shaders, there is some fancy new OpenGL code in PyMOL that I'd like you to test (Win & Mac). PyMOL now has "sphere modes" that are memory-efficient, can provide much greater image quality for interactive CP