Re: [PyMOL] Homologous modelling

2005-05-03 Thread Scott Classen
Hi Uwe, try Modeller: http://salilab.org/modeller/ Ciao, Scott On May 3, 2005, at 10:02 AM, Heinz-Uwe Hobohm wrote: Hi, assume you have a protein structure (P1) and a second protein sequence (S1) without structure. Both sequences align with about 50% sequence identity over a large por

[PyMOL] Homologous modelling

2005-05-03 Thread Heinz-Uwe Hobohm
Hi, assume you have a protein structure (P1) and a second protein sequence (S1) without structure. Both sequences align with about 50% sequence identity over a large portion of both sequences without gaps (Smith+Waterman). Is there a way to automatically exchange residues from P1 against the

[PyMOL] light and feedback

2005-05-03 Thread andreas
Hey all, I have to unrelated questions. Hopefully someone knows... When I put a CGO plane behind an object and render the scene, the shadow is larger than the object indicating a divergent light source. Is there a way to make the light source less divergent, maybe even somewhat convergent (I'm