Is it possible to view the molecular surface representations which are
generated by the program MS (Connolly) or the similar output obtained from
DMS (UCSF). I am aware that one can generate the molecular surface using
PyMol but that is not what I want to do.
Chimera has an option by which MS/DMS
Shawn Milano wrote:
Hi,
I want to show an electrostatic surface of my protein for publication. In
Pymol, I believe I can use generate-vacuum electrostatics. However, I am not
quite sure what the difference is between absolute and relative protein
surface potential. Could you help me with thi
ack! the code i sent works with some simple functions, but not with
everything. i'll toy around with it some more, but i'll still have the
same question: would it be possible for pymol to save the results of
cmd.extend in session files and restore them if security is turned off?
thanks,
-mi
hi,
i have some scripts that load a bunch of files and do various smart things to
make it easy to work with my data. in particular, they define functions and
use cmd.extend() to register those functions. the setup takes a long time, and
is therefore inconvenient. i'd like to go through it o
Hi Shawn,
As you can see when you select the generate electrostatic surface
within PyMol - Warren has stated that it is "unvalidated experimental
code" and the results should be viewed with skepticism. If you want
publishable electrostatics calculated using more realistic estimates of
dielect
