Thanks to your reply, I could find a new solution "3DNA"(
http://rutchem.rutgers.edu/~olson/3DNA/ )
It's free and has lots of function.
Thank you again.
* I searched Nucgen at http://scholar.google.com and followed the first result.
* This "3DNA" was among paper list which has cited the Nucgen ar
The Namot program is free:
http://namot.lanl.gov/
It's pdb format it outputs is a bit delusional.
This is a shell script I wrote to fix it up (relies on having CNS):
http://babyurl.com/DpdVJe
HTH,
Bill
Bill,
I've noticed this happens on some machines (G5 imac) and not others (G5
dual, G4 powerbook, G4 tower). I may be a bug in Panther, since the
problems seems to have been fixed in the Tiger beta, but...well...that's not
out yet. It does seem to depend on whether or not any other programs
acti
> is it possible to use the pdb loader in a *.pml style script?
With the shipped plugin it may be hard. I wrote the original, but have
since written a new/improved one that does not tough the filesystem and
adds a "remote" command that will fetch and load pdbs as well. You can
see the code for t
Hi folks:
I bought a new G5 fairly recently. When using pymol, the screen goes
white for brief instances when rotating a molecule, giving rise to a
flashing effect that is so off-putting it keeps me from using pymol on
this machine.
I have a 20" monitor and the following video card:
PCI/AG
To add to what Cameron said:
* Cameron Mura [2005-03-24 09:44] wrote:
> Hi Hyun-Chul,
>
> It's easy to use PyMOL to build protein fragments in standard geometries
> ("Build" menu in the Tcl/Tk GUI window), but I'm not sure about DNA.
> Three non-PyMOL methods that I'm aware of are:
>
> (1) T
Hi Hyun-Chul,
It's easy to use PyMOL to build protein fragments in standard geometries
("Build" menu in the Tcl/Tk GUI window), but I'm not sure about DNA.
Three non-PyMOL methods that I'm aware of are:
(1) The program "B" (aka "Biomer") from Dave Case's group at Scripps
(http://www.scripps
hello,
is it possible to use the pdb loader in a *.pml style script?
thanks,
marc
On Mar 23, 2005, at 14:14, Antonio Morreale wrote:
I'm new to pymol, and maybe the question is very basic, but I hope to
have your help. I would like to read grids files generated by in house
program, how can I do this within pymol?
If the data is defined on an equidistant grid, and if you can
On Mar 23, 2005, at 17:38, Warren DeLano wrote:
Yes, but it is currently awkward because you need to protect the other
atoms
in the object from moving first (action menu -> movement -> protect on
the
inverse selection), then you can drag the object moving just the atoms
in
the original select
Hi there,
I'm having problems visualising apbs .dx maps in pymol. Pymol (0.97)
and apbs (0.3.1) compile from source fine and run otherwise normally.
apbs_tools launches ok within pymol and the user interface appears fine.
On initiating the calculation, pink dots representing charge assignme
Hi there,
I'm having problems visualising apbs .dx maps in pymol. Pymol (0.97)
and apbs (0.3.1) compile from source fine and run otherwise normally.
apbs_tools launches ok within pymol and the user interface appears fine.
On initiating the calculation, pink dots representing charge assignme
Dear PyMOL users,
i am happy to announce that the rtools package is out in a new polished
version (finally). You can get it from
http://www.rubor.de/bioinf
rtools is a PyMOL plugin that has
- a click-box for frequently used commands
- commands for easily making
- plugins for some external progra
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