Daniel,
This is a reasonable request, but no, it isn't possible right now -- sorry.
If it isn't necessary to be able to turn the distances on and off, then you
can name them using a preceeding underscore "_" so that they are omitted
from the object list.
Cheers,
Warren
--
Warren L. DeLano, Ph.
I want to create a lot of distance objects (in the hundreds) between
particular atomic pairs. Obviously I can make a script like the
following, inserting the exact atomic selections that I want:
distance distobj12 = (atom1), (atom2)
distance distobj34 = (atom3), (atom4)
... etc.
However, I wi
Here are a series of commands to help you produce a simple graphical
representation of different classes of amino acids in protein structures (we
have these scripts installed in a separate "function panel" that was written in
house, but you can also save them as (name).pml scripts and run them w
Eduard,
Thank you for pointing out some current deficiencies in PyMOL. This may not
be the optimal tool for your task.
While it is possible to move molecules and fragments of molecules, there
isn't (yet) any way to move an arbitrary selection...disconnected atoms
either need to be moved one by o
Hi Dustin,
I have used a combination of perl and bash scripts to accomplish something
similar to what you're doing. The one small difference is that I was loading
several PDB files (not SDFs). You'll have to figure out how to do this part
if it's significantly different from the loading comma
Hello,
I would be interested whether there is a way to
calculate and visualize the hydrophobic
interaction such as Phe-Phe or Leu-Leu etc.
Maybe it would be a good add to the program
because there are not so many softwares which can
do that.
Regards
Ferdinand
--
--
Ferdinand Molnár, M.Sc
