Hellow PyMOL Users,
I am curious to know whether anyone has found Apple's built-in audio & video
conferencing capabilities (iChat AV/iSight) to be helpful in scientific
interactions or discussions. The new MacOS Tiger release should in theory
make it possible for us to hold virtual PyMOL users gr
Hi Einat,
* Einat Sitbon [2005-03-03 14:27] wrote:
> 1) Secondary structure can be viewed as cartoons, or as colors. The problem
> is the boundaries are not the same. If I color a strand by secondary
> structure, it seems that the following loop is a strand as well. I?m
> attaching a figure to
> 1. Is there a simple way in pymol to replace an amino acid in
> a given structure? If so, how can you then check (other than
> visibly) if there are any glaring steric/electrostatic clashes?
Yes, using the mutagenesis wizard. But no, there's no
refinement/validation possible so it isn't as
>
> I have two points that I think should be improved in
> following pymol versions, and one question.
> 1) Secondary structure can be viewed as cartoons, or as
> colors. The problem is the boundaries are not the same. If I
> color a strand by secondary structure, it seems that the
> following
Hi everyone,
Two part'er here:
1. Is there a simple way in pymol to replace an amino acid in a given structure? If so, how can you then check (other than visibly) if there are any glaring steric/electrostatic clashes?
2. Is there a way of incorporating non-native or modified amino acids into the p
Dear PyMOL users,
A new version of nuccyl has been released:
http://www.mssm.edu/students/jovinl02/research/nuccyl.html
Version 1.5.2 fixes a bug that prevented nuccyl to process correctly
nucleic acids containing palindromic sequences or nucleotides with
identical type and name that
