Hi all,
I am overjoyed to announce that DeLano Scientific has grown, at last! *We*
are now two people full-time: myself and Joni Lam (mailto:j...@delsci.com),
who started today.
Over coming weeks, Joni, as the Business Operations Manager ('da bom'), will
be assuming responsibility for most bus
PyMolers & PyMolWiki Editors,
After reaping stacks of suggestions from users & wiki gurus I have
devised the first pseudo-structure of the wiki. I say
"pseudo-structure" because: MediaWiki has no built-in hierarchy; and,
because as the wiki grows it'll take on its own structure regardless of
what
Hi All:
just a quick follow up on Warren mentioning the Sharp 3D LCD display. After
a couple of trials with various drivers I got the LCD to work under the
following setup:
Nvidia Quadro FX1100 with driver V67.22
Windows XP with all the latest SPs and patches installed (may not matter)
One head o
On Feb 17, 2005, at 12:32, Warren DeLano wrote:
Luca,
(I can't believe
PyMOL's cartoon command still does not recognise the most
common 5' and 3' nucleotides!),
Sorry, I neglected to send you an email about this: there was a new
setting
added to the beta called "cartoon_nucleic_acid_mode"
> The only difficulty I have with these movements is that when
> you do fragment rotation you never know exactly what the axis
> of rotation is going to be. Usually I have to play around
> with the overall camera view and the atoms I'm grabbing a few
> times before I can get the rotation I wan
Luca,
> (I can't believe
> PyMOL's cartoon command still does not recognise the most
> common 5' and 3' nucleotides!),
Sorry, I neglected to send you an email about this: there was a new setting
added to the beta called "cartoon_nucleic_acid_mode"
set cartoon_nucleic_acid_mode, 1
If you set
If you set the mouse mode to 3-button editing mode, you'll see that
Shift-Left and Shift-Middle are RotF and MovF, respectively.
So with nothing selected, if you do Shift-Left, grab an atom of a molecule
and move it, the whole molecule will rotate while all other structures are
fixed. The sam
Dear Torin,
Thanks for your reply. However my question was not about automatic
alignment of two protein structures. I want to move one of the structures
while keeping the other one fixed, so that I can consider alternate
alignments etc ..
So is there a way to do that with PyMOL.
thanks
kris
Hello,
I apologize for being late, but... how about a section about nucleic
acids? As in any other related program, they always end up being the
poor siblings of proteins (I can't believe PyMOL's cartoon command
still does not recognise the most common 5' and 3' nucleotides!), and
I'm pretty
Okay, smart.., forgot the attachment and took a while to
realize it :)
On Thu, 17 Feb 2005 11:21:53 +0100
"T.A.Wassenaar" wrote:
Hi Guys,
For those interested, I've made a macro for Povray which
allows to transform the Pymol povray output back to model
space, or to transform povray mode
Hi Guys,
For those interested, I've made a macro for Povray which
allows to transform the Pymol povray output back to model
space, or to transform povray models to Pymols camera
space.
After #including "pymolmacro.inc" call PYMOL_VIEW() with
the eighteen floats from cmd.get_view() to set th
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