On Tue, 15 Feb 2005, Douglas Kojetin wrote:
While we're throwing out all these ideas and possibilities:
Is it ... possible? ... relatively painless? ... difficult? ... to use
BioPython modules in PyMOL scripts?
if you compile python from source (it's pretty easy on most linux systems (i had
On Tue, 15 Feb 2005, Douglas Kojetin wrote:
While we're throwing out all these ideas and possibilities:
Is it ... possible? ... relatively painless? ... difficult? ... to use
BioPython modules in PyMOL scripts?
if you compile python from source (it's pretty easy on most linux systems (i had
While we're throwing out all these ideas and possibilities:
Is it ... possible? ... relatively painless? ... difficult? ... to use
BioPython modules in PyMOL scripts?
Doug
> - structure alignment (pretty simple, but a lot of people don't know how
> to use the various commands)
And the possiblity of using PyMOL as a structure alignment editor???
krishna
Unless I've missed the documentation pages before, with respect to
python integration:
1. When to use '@script.py' vs. 'run script.py' (I know this now, but
others starting out may not)
2. List of all cmd.xxx() options. I've encountered a few pymol
commands where cmd.xxx() is not support, b
> Please revise, extend, and embellish.
- structure alignment (pretty simple, but a lot of people don't know how
to use the various commands)
- as part of movies, a large section on available 3rd-party apps and
codecs would be very useful (as well as workarounds for PowerPoint
madness)
-Nat
Please revise, extend, and embellish.
plugins
- a list of existing plugins
- a tutorial on writing plugins
-michael
Cheers,
Warren
--
Warren L. DeLano, Ph.D.
Principal Scientist
. DeLano Scientific LLC
. 400 Oyster Point Blvd., Suite 213
. South San Francisco, CA 94080
. Biz:(650)-872-09
Another potentially useful category:
Plugin/Modules
--> ex. Michael George Lerner's APBS plugin
--> other existing and future plugins
This would make it easy for others to contribute
tips/explanations/experiences/etc. to these extremely useful add-ons.
On Feb 15, 2005, at 1:11 PM, Warren De
Although the section may be small to begin, I'd like to see (and will
hopefully contribute to in the future) a section about 'NMR
Applications'.
Thanks,
Doug
On Feb 15, 2005, at 1:11 PM, Warren DeLano wrote:
- Crystallography Aplications
- Symmetry
- Electron Density
Actually no, it's not...now there's an important topic for the Wiki!
Cheers,
Warren
--
Warren L. DeLano, Ph.D.
Principal Scientist
. DeLano Scientific LLC
. 400 Oyster Point Blvd., Suite 213
. South San Francisco, CA 94080
. Biz:(650)-872-0942 Tech:(650)-87
PyMOL Users,
Jason Vertrees (UTMB) has volunteered to lead the creation of a PyMOL Wiki,
and has found a suitable location for hosting. We now need your input on
how the Wiki should be organized. Please summarize your ideas to the
mailing list in the next 24-48 hours so that Jason has your input
Hi,
I should probably google about some more for an answer to this, but
maybe someone who's reading this already knows -- is a detailed
description of pymol's molecular editing functionality available
anywhere online (e.g., ctrl-right-click to select a bond and ctrl-d to
delete it, and so on..
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