Ramon,
Though PyMOL's molecular editor is extensible in this way, there are some
pieces missing when it comes to adding new fragments into the mix. What
you hope to do will require general design improvements followed by some
Python development. For example, one of the problems with the peptid
Dear Pymol-users:
We are working on an interface between PYMOL and ECEPP/3 inorder to
perform a conformational search in small peptides. We have done most of
the dirty work, but still can not figure out how to include coordinates
for End Groups other than the ones given in the modules/chempy s
Hi all,
I was wondering if there are any simple tools to compute various
molecular surface properties, such as electrostatic, polarizability,
hydrophobicity, or even HOMO-LUMO, for small organic molecules. I
understand Miguel from Jmol project is actively developing the surface
feature. Just wan
Charles,
I've added an "animate" option to commands like zoom, orient, origin, scene.
reset
zoom all,100,animate=1
orient animate=1
Cheers,
Warren
PS. Set animation_duration to control the length of the animation.
--
Warren L. DeLano, Ph.D.
Principal Scientist
. DeLano Sci
Can the cmd.zoom func be used to gain access to the animated zoom? Is
there any way to utilize this from a script?
Thanks,
Charlie
Hi,
Say, what do people think about the idea of creating a PyMOL Wiki to hold
nuggets of information like this? Or is there a better alternative to
Wiki now available?
I (still) think it's a great idea, and bet it would serve as an
indispensible resource to both novice and seasoned PyMOLer
On Tuesday 08 February 2005 01:44, Warren DeLano wrote:
> Say, what do people think about the idea of creating a PyMOL Wiki to hold
> nuggets of information like this? Or is there a better alternative to
> Wiki now available?
As i have been maintaining sort of PyMOL FAQ for some time, i would
