[PyMOL] pymol and Desktop Manager on OS X

2004-10-25 Thread Jianghai Zhu
Hi, all, Anybody has any experiences of using full-screen pymol and desktop manager at the same time on OS X? When I am running desktop manager and put pymol into full screen mode, I found every virtual desktop is full-screen pymol. I like to use this to switch back and forth between my pymo

RE: [PyMOL] mdo

2004-10-25 Thread Warren DeLano
> I am trying to make a simple movie with a 90 degree rotation > thru the x-axis. mset 1 x90 for a in range(1,91): cmd.mdo(a,"turn x,1") Cheers, Warren -- mailto:war...@delsci.com Warren L. DeLano, Ph.D. Principal Scientist DeLano Scientific LLC 400 Oyster Pt. Blvd., Ste 213 South San Francisc

[PyMOL] mdo

2004-10-25 Thread Michael Cosgrove
Hi pymolers. I am trying to make a simple movie with a 90 degree rotation thru the x-axis. This is what I have tried: mset 1 x90 mdo 1: turn x,1; mpng filename This script gives me 90 identical frames with no rotation. Any suggestions? I have also tried do

[PyMOL] Re: Map Origin and PDB (surendra negi)

2004-10-25 Thread William Scott
Since you have ccp4, you can use mapmask: #!/bin/sh # Extend to cover the molecule mapmask mapin yourmap.ccp4 xyzin yourmodel.pdb mapout newmap.ccp4 << eof BORDER 5.0 MODE mapin eof