[PyMOL] Free text labels

2004-09-22 Thread Uwe Mueller
Dear pymol experts, Is there a way to attach a user defined text as a label to a particular atom ? Furthermore, how can I modify the distance between the atom center and label? Thanks a lot, Uwe -- ___ Dr. Uwe Müller Freie Universität Berlin Proteinstrukturfabr

[PyMOL] Increasing contrast between black and white cartoons

2004-09-22 Thread Peter J Stogios
Hello, I have three protein chains represented as cartoons. I have one black chain and two white chains. I'd like to emphasize the black chain over the white chains (i.e. have the black chain as an intense black and the white chains as very faint). I've played with various settings such as

[PyMOL] modeling in pymol

2004-09-22 Thread S. Frank Yan
Hi, I was wondering if PyMOL has some simple modeling functionalities, such as rotate through a particular bond (change the dihedral angle), delete/form bonds, superimpose, etc., via mouse. These functions will be particularly useful for molecular modeling besides the wonderful graphics. Also,