Anton,
Povray isn't very difficult, but it does take some time to get things
working and looking good. If you are trying to make a quick figure for
a talk this afternoon I suggest forgetting about it, but if you have
some time to mess around...go for it. With that said I'll tell you how
I do i
Thanks Scott. I keep trying to mess with the non-bonded size instead
of the regular sphere size.
Alex
On Sep 8, 2004, at 2:38 PM, Scott Classen wrote:
Alex,
You need to create two separate objects one for your metal and another
for your water
create MG, (chain M)
create WAT, (chain W)
t
Alex,
You need to create two separate objects one for your metal and another
for your water
create MG, (chain M)
create WAT, (chain W)
then you can change the properties of each object individually
set sphere_scale, 1.2, MG
set sphere_scale, 0.8, WAT
good luck,
Scott
On Sep 8, 2004, at 2:1
Is there a way to set the size of non-bonded spheres to two different
sizes within the same residue? For example, I have a metal ion with a
bound water and have both in the same residue but I want the metal ion
to be bigger than the water.
I have check the list archives and googled "PyMol non
Hi Scott,
Thank you for the help. I'm totally unfamiliar with PovRay. When you say "You
can write out the primitives from PyMol" what do you mean?
Anton
- Original Message -
From: Scott Classen
Date: Wednesday, September 8, 2004 11:00 am
Subject: [PyMOL] light source inside a molecul
Hi Anton,
from my experience Povray is the best tool for this type of effect. You
can write out the primitives from PyMol and then create some beautiful
scenes in Povray including multiple different types of light sources
including lights inside of objects such as drugs/ligands etc.
Scott
On
I think it would be nice if pymol didn't show the hidden files in the file
browser,
as there are usually quite a lot of those in a user home.
--
All generalizations are false, including this one.
-- Mark Twain
Hi folks:
I was alerted to the fact that I made a mistake in my original fink
install scripts for apbs and its dependency called maloc. The
corrected ones are here:
http://chemistry.ucsc.edu/%7Ewgscott/fink/info/apbs.info
http://chemistry.ucsc.edu/%7Ewgscott/fink/info/maloc.info
I can't put
I'm using PyMOL as my main visualisation tool, and have a question
relating to the transfer of data from my application to the viewer.
Inside my programs, I typically have a number of molecule objects, and
on each molecule, have made a number of selections (of atoms, of
residues or of chains). No
