[PyMOL] controlling pymol externally (pipes?)

2004-08-26 Thread Joshua Tasman
This was a very helpful answer. If anyone would like to see equivalent c code, I'd be happy to post it. From Chris: hi Josh- I'm no programmer but I used this to pipe some output to pymol from perl: $pid=open(PYMOL,"| $pymol_path -qpxif 0"); wh

Re: [PyMOL] controlling pymol externally (pipes?)

2004-08-26 Thread Michael George Lerner
PyMOL comes with an XML-RPC server .. I don't know anything about it, but I found this post on the MMTK list: http://starship.python.net/pipermail/mmtk/2002/000435.html -michael -- This isn't a democracy;|_ |Michael Lerner it's a cheer-ocracy. | ASCII ribbon campaign (

Re: [PyMOL] raytraced labels

2004-08-26 Thread Anthony Duff
At 03:11 AM 24/08/2004, Robert Lucas wrote: I have to admit though, once you raytrace the labels become almost unreadable and I think I will end up using them only to help me to position the final labels in a picture editing program... This has also been my conclusion. If have settled on the

[PyMOL] controlling pymol externally (pipes?)

2004-08-26 Thread Joshua Tasman
Has anyone had sucess running pymol "remotely", like from another program on the same system? I'd love to be able to dynamically display output of my C++ program through pymol. Embedding the entire pymol interpreter in my program seems like an unwieldy solution. I've tried starting pymol fro

[PyMOL] Movie with different panels

2004-08-26 Thread Tsan Xiao
Hi! I am trying to figure out how to make a movie with several panels, i.e., one panel showing large protein structure domain movements, the other on the same screen showing the corresponding detailed structural changes at the domain interface. It would be nice to interlacing these two together so

Re: [PyMOL] External GUI window problem

2004-08-26 Thread Luca Jovine
I am having a problem with pymol on a Macintosh OS X system. When I start the program, the viewer window comes up but I cannot see the external GUI Do I need to re-install the program ? Hi Rinku, Which version of PyMOL are you using? If you are using the hybrid X11 version, you will firs