On Jul 23, 2004, at 4:16 PM, Chris Larkin wrote:
hi michael-
such a figure should be no problem, could you send me an example of
what you're ending up with and maybe I can figure out your problem.
chris
Hi Chris, thanks for your willingness to help me troubleshoot:
I may have been too hast
Hi PyMOL'ers
I'm trying to figure out how to do something that looks like the
following figure:
http://www.uvm.edu/~mbovee/structures/surface.png
It seems any individual residues I color always map onto the cartoon
ribbon representation rather than onto the surface representation. Is
this c
On Friday 23 July 2004 13:41, Dirk Kostrewa wrote:
> I wanted to have a program that can easily calculate cavities in proteins
> to be displayed with pymol (see e-mails below for details).
> Thanks to Gareth and Lari I've got two pointers to such programs:
> I've tried PASS, recommended by Lari and
Hello,
the old code of the scriptBox was converted into a modern PyMOL plugin,
hopefully eliminating all installation problems and stripping down code
size to 3 KB.
It is also available from
http://www.rubor.de/bioinf/pymol_extensions.html
Kristian Rother
I wanted to have a program that can easily calculate cavities in proteins to
be displayed with pymol (see e-mails below for details).
Thanks to Gareth and Lari I've got two pointers to such programs:
I've tried PASS, recommended by Lari and got a surface picture of my cavities
within literally a
Hi,
I'm trying to add some labels to a diagram using the cyl_text method,
but I can't find any way to change the font size. In the only example
I've found:
# draw text using cgo
from pymol import cmd
from pymol.cgo import *
from pymol.vfont import plain
cgo = []
axes = [[2.0,0.0,0.0],[0.0,2.
Dear PyMOL users,
One of our students and i have written a plugin that colors proteins by
the amino acid scales on www.Expasy.ch.
It is available at http://www.rubor.de/bioinf
Also, i have updated the PyMOL tips pages to reflect some topics
discussed here in recent months.
Yours,
Kristi
