[PyMOL] bug in resizing viewport?

2004-06-09 Thread Matt Franklin
Hi all - I'm noticing some odd behavior with MacPymol (v0.94) involving the "viewport" command to resize the window. This command seems like it couldn't be more straightforward: specify width and height in pixels. However, look at the following output: PyMOL>viewport 100,100 PyMOL>png test.

[PyMOL] RE: How to change PDB into PDBQ using PyMOL

2004-06-09 Thread Warren DeLano
Ankit, To my knowledge, no one has worked this out, but you might have better luck getting an answer on the PyMOL Users mailing list, to which I've cc'd this message. My impression is that AutoDock is facilitated using the AutoDock tools built into PMV. In principle, PyMOL could

[PyMOL] CGO raytracing problem

2004-06-09 Thread Gareth Stockwell
Hello, I have a problem ray-tracing some CGO objects. Basically I have a script which produces a surface, in the form of a load of CGO triangles. This is done using a command which looks like: my_cgo = [ BEGIN, TRIANGLES, COLOR, r, g, b, VERTEX x1, y1, z1, VERTEX x2, y2, z2, VERTEX x