Sergio,
PyMOL probably isn't the best tool for doing this, but it can be done:
To add to a free N-terminus, pick (ctrl-middle-click) the N-terminal
nitrogen, and then press Alt-Letter (on Macs, Option-Letter) for the amino
acid you want:
For example: Alt-G adds a glycine
To add onto the C-term
Oi Sergio,
You should pick (PkAt) either the atom N or C
depending towards which end you want to extend
the chain:
N ==> to extend the N-terminus
C ==> to extend the C-terminus
and then select the residue you want to add
from the Build->Residue menu.
Um abraco,
Zac
On Fri, 26
Hi all,
I load my protein pdb file and I'm trying to add the missing residues to
this molecule. Anyone knows how to do it?
Thanks in advance,
Sergio.
Ken,
set ray_interior_color, color-name
eg:
set ray_interior_color, grey30
To restore default:
set ray_interior_color, -1
Cheers,
Warren
> -Original Message-
> From: pymol-users-ad...@lists.sourceforge.net
> [mailto:pymol-users-ad...@lists.sourceforge.net] O
On Thu, 2004-03-25 at 18:38, Warren DeLano wrote:
> You need to provide normal vectors too. Otherwise OpenGL & the
> raytracer won't be able to light them correctly.
OK, that works fine now. If anyone else is interested in making CGO
'walls', a simple script is now on my PyMOL page (it's called
Anyone know the command (for scripting) to set the opaque interiors flag?
In the GUI it's under Display > Rendering > Opaque Interiors.
Thanks,
Ken
Einat,
On Thu, 2004-03-25 at 18:50, Warren DeLano wrote:
> For web-page embeddable molecular graphics today, look to Jmol:
> http://jmol.sourceforge.net
Another alternative is the AstexViewer Java applet - free, but
unfortunately closed source.
http://www.astex-technology.com/AstexViewer/visual
