[PyMOL] smoothed path through protein?

2004-03-18 Thread Seth Harris
Hi all, I was wondering if one has access to the coordinates of the old smoothed ribbon path through the protein or some good ideas on how to calculate such a path. I wanted to have the ribbon_rider script I wrote earlier follow such a path to avoid the jarring switching of directions it cur

Re: [PyMOL] running PyMOL remotely - how to do it without GUI

2004-03-18 Thread Douglas Kojetin
one other option. if you use ssh (instead of telnet) ... use the '-X' flag and there's no need use the xhost command: ssh -X u...@hostname see 'man ssh' for all options -- your server may need to be setup to use this specific switch. if you are under windows, you can check out 'cygwin' to

[PyMOL] cylindrical helix problem

2004-03-18 Thread Laurence Pearl
When I set 'cartoon_cynlindrical_helices' to 1, I'm getting cylinders with coloured ends, but black sides I'm using version 0.92 on OSX 10.2.8 any ideas ?? -- Laurence H. Pearl Section of Structural Biology