Dear Buz,
> I've been using Pymol 0.93 on SuSE Linux 8.2 for a few hours now, and I'm
> having trouble ray tracing graphics.
> Each time I start the ray tracer Pymol quits with a segmentation fault
> error;
I guess you are running into a compiler bug (or a bug in PyMol which gets
exposed only
Dear all,
I am preparing a figure of a molecualr surface, colored by the
hydrophobicity of surface residues. Can pymol do this job?
How about showing atom C* in a color, and N* and O* in another
color?
In fact I have tried GRASP but failed in coloring the surface. I used
"r=hyd", but could not c
Hi,
I've been using Pymol 0.93 on SuSE Linux 8.2 for a few hours now, and I'm
having trouble ray tracing graphics.
I installed Pymol from the source file pymol-0_93-src.tgz.
Each time I start the ray tracer Pymol quits with a segmentation fault error;
/usr/local/pymol/pymol.com: line 2: 29720
Hi there Warren,
I have been using the v0.94 MacPyMOL that we got from you last december.
It has been very stable on my desktop system:
dual cpu G4867 MHz power PC (version 2.1)
OSX 10.2.8 (6R73)
v0.94
However, using the same version on my lap top has not been so reliable
G4 powerboo
MacPyMOL beta testers:
Are the latest beta builds of MacPyMOL still exhibiting a significant number
of spontaneous crashes in your hands?
http://delsci.com/macpymol
So far, I have been utterly unable to reproduce the reported instability on
my G4 and G5 test systems. Thus, I am wondering whe
> -Original Message-
> From: Charlie
> Sent: Wednesday, February 18, 2004 8:56 AM
> To: Warren DeLano
> Subject: Re: [PyMOL] selecting multiple atoms ie oxygen
>
> Warren DeLano wrote:
> > John,
> >
> >color red, 5paa and elem o
> >
> > The problem with using asterices as wildcards
Anyone who works with nucleic acids will certainly prefer the current
situation. From the PDB format guidelines:
* The asterisk (*) is used in place of the prime character (')
for naming atoms of the sugar group. The prime was avoided historically
because of non-uniformity of its external repr
Warren,
Personally, I'd much rather have wild-card selections in atom names and have to
deal individually with the ill-conceived PDB files than the other way around.
Regards,
David Horita
-Original Message-
From: pymol-users-ad...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sou
John,
color red, 5paa and elem o
The problem with using asterices as wildcards in atom names is that some
ill-conceived PDB files actually use them in atom names.
However, PyMOL does support the use of a terminal wildcard in some cases,
such as with the delete command...
create obj01, none
I wish to select multiple oxygens (labelled O1, O2 etc.. within my pdb file) and
colour them red for example. Is there any easy way of doing this other than
typing out a list of all the oxygens I wish to select?
eg. color red, (5paa and (name o1+o1a+o2+o3+o4+o5+o1p+o2p+o3p))
I know in molscript i
On Tuesday, February 17, 2004, at 02:57 PM, ALEX DAJKOVIC wrote:
hello-
i am new to pymol and am trying to figure out how to differentially
color different chains (i.e. different proteins) in the structure i am
viewing. the structure i am working with is actually a structure of
two
proteins
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