[PyMOL] show residues forming hydrogen bonds with each other

2004-01-28 Thread Yunfeng Hu
Hi, I have the following task to do and wonder if anyone can show a simple way to do it. I want to show the residues forming intermolecular hydrogen bonds between two proteins. dist protein A, protein B, 3.5 Then I want to show those residues that form hydrogen bonds with each other. How do I

RE: [PyMOL] SGI Crystal Eyes Problem

2004-01-28 Thread Warren L. DeLano
Chris, PyMOL only support one kind stereo of stereo: OpenGL quad-buffered-stereo. It's unclear to me from your message that your Octane can support QBS. Sybyl, I believe, can run using top/bottom stereo, so I am not sure that is a reliable indicator... PyMOL usually autodetects QBS on X

[PyMOL] SGI Crystal Eyes Problem

2004-01-28 Thread Christian Rummey
Dear all, I'd like to use pymol with our sgi shutter glasses, which are standard ones on an sgi octane R12000, working fine e.g. with Tripos SYBYL. when I try to use them with pymol, the default stereo setting isn't quad-buffer (which means it is not available?), and if I manually set the stereo