RE: [PyMOL] nmr ensemble alignment

2004-01-26 Thread Warren L. DeLano
Doug, As far as I know there isn't any resource online, so I'll try to answer your questions here: PyMOL does not automatically align structures. intra_fit is presumably the command you're looking for to do this, since you're placing models are in one object. intra_fit name ca, 1 would

[PyMOL] nmr ensemble alignment

2004-01-26 Thread Douglas Kojetin
Hi All- Will reading in a structural ensemble load pdb01.pdb, ens load pdb02.pdb, ens ... ... automagically align the structures? If not, do I need to run another command, such as ' intra_fit (name ca) ' ? Or should I use normal 'fit'? Also, what is the best method for determining th