[PyMOL] working directory

2004-01-18 Thread Lesley Debono
i have pymol installed on an OSX machine. When I begin pymol i am in the root ("\") directory. My scripts are in a different directory. Is there a way I can begin in another directory when starting Pymol? cheers Lesley

RE: [PyMOL] Restrict surface transparency to limited region

2004-01-18 Thread Boris Brumshtein
Dear Roger, I probably have a very simple solution for you. First create two objects of your protein with a distinct names. Then show a non-transparent surface for one of the objects. Hide the surface for the residues you'd like to see under the transparent surface with a comand: "hide surf