Hello all,
Here is a simple script that automates the electrostatic potential
surface generation using Gromacs, MEAD, and Pymol for visualization.
It's exclusively based off of the post by Esben Peter Friis:
http://sourceforge.net/mailarchive/forum.php?forum_id=60&max_rows=25&style=flat&viewmonth
Hello,
I have been using PyMol for a few months now, and I am wondering if I
can adjust the radius about which the surface is calculated. I have a
very large protein (28,000 atoms) to model, and I would like to be able
to create a more evenly rounded surface. Not "realistic" perhaps, but
e
Hi there,
Trying to make myself a desk copy of the user manual is proving to be a
pain.
I can print the text of the table of contents, but anything with screen
shot graphics never prints from our new HP2300 (48MB of memory). The
refman pdf printed fine, but this userman pdf file seems corrupted
Ruslan,
PyMOL can't yet calculate the electrostatic surface, but it can
display the potential as output by Grasp, Delphi, MEAD, or Zap.
Cheers,
Warren
--
mailto:war...@delanoscientific.com
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154
Fax (650
Hi,
I want to assign my pymol sessions to automatically open using the new
OSX-native pymol 0.93, but I cannot select the app from GetInfo >
OpenWith. It is greyed-out. Is there a command line way to do this?
thanks,
--Michael
On Thursday, December 11, 2003, at 05:47 PM, Warren L. DeLano wrote:
...PyMOL (like other programs) simplifies the secondary structure
concept down to a
per-residue property. There is no such thing as a sheet or helix in
PYMOL, but merely sets of proximal residues with a secondary structure
pr
Hi all,
Inexplicably, I haven't been following the PyMol news lately. Does it
now calculate and display the electrostatic fields/surfaces of proteins
(a la GRASP, or similar)? If it does, starting from which version?
Thanks,
Nukri
Ruslan Sanishvili (Nukri), Ph.D.
GM/CA-CAT, Bld. 436, D007
Biosci
