PyMOL Sponsors and Users,
Please be advised that due to vacations, travel, and participation in
the CCP4 study weekend, DeLano Scientific LLC will be officially closed
from December 21st through January 7th.
Sporadic email communication may be possible before Dec. 24th and after
Jan. 3rd, but e
It is probably easiest to do this with a python script. Example render.py
script:
from pymol import cmd
import glob
files = glob.glob("*.pdb")
for f in files:
cmd.load(f, "tmp")
cmd.show("sticks", "tmp") ## or whatever you display, color, etc.
cmd.ray(320,240) ## or
Hi All-
It's be over a month since pymol 0.93 has been released ... anyone know
when a Fink distribution will be available? Or how to do it manually
(using Fink, without the main/online Fink database knowing about it)?
I tried compiling the source manually, but I got an error similar to
the
I have a quick question regarding pymol and batch files.
First, I am using pymol to render images of a membrane simulation that uses
point particles, as opposed to molecules.
My problem arises when making movies of the simulation. My computer
(either mac or PC) will not allow pymol to handle
Robert,
If you're using version 0.93 or greater, set mesh_width, value
will adjust the mesh thickness in units of pixels. Something in the
range of 1.5-2.5 usually works best.
set mesh_width,2.0
ray
If you're using an older version, you'll need to set mesh_radius
instead, which is in an
Hi there,
1. How can I reduce the density-map line thickness in the ray-traced
image?
2. Is there a way to just display the density around a ligand
many thanks
robert
Robert Schwarzenbacher, PhD
The Joint Center for Structural Genomics
phone: 858 822 3637
