[PyMOL] Need advice on graphic card

2003-11-10 Thread Yu Chen
Hello, pymolers I checked pymol's homepage about the graphic card. But still not so sure, hope someone would have similar setting as ours, so could give us some advices on what card to buy. We running Redhat 7.3, XFree86 4.2.0, kernel 2.4.18-3. Currently, we running on Matrox Millennium G450,

[PyMOL] Pymol 0.93 and OS X - X 11

2003-11-10 Thread Michele Fuortes
Hi all, I'm using a G4 and so far i have been using the GNU-Darwin version which is the CD I bought. I use it starting from X11 in Panther and it worked well. Now it seems that the new Mac version 0.93 is much faster. But no GUI menu :-( What I tried to do is to copy all the new modules files fro

Re: [PyMOL] H-bond drawing?

2003-11-10 Thread Tsjerk Wassenaar
Hi Claire, If it's only a few H-bonds, probably the quickest is the following: Select the first atom with ctrl-shift left-mouse button Select the second atom with crtl-shift right-mouse button then issue the command 'distance ' That should draw you a nice dashed bond. Hope it helps a bit, maybe

RE: [PyMOL] H-bond drawing?

2003-11-10 Thread Gareth Stockwell
Hi Claire, All you need to do is: 1) Create selections for the two atoms you want to H-bond. There are several different ways to do this in PyMOL (see the manual for details), but for example, to bond chain A, Thr 15 OG1 chain D, Asp 184 OD1 you would do select donor, A/1