On 3 nov. 03, at 22:29, pymol-users-requ...@lists.sourceforge.net wrote:
2)The interface for mac is .. well.. very uncomfortable. Is there a
chance of improvement soon?
What exactly do you mean?
I guess Einat talks about the tk interface that is missing in the
native OS X version of PyMol.
Ben,
Great response! Indeed, the PDB's limited capacity for secondary
structure does indeed represent this as one single helix, not two.
> +/- 15 degrees is pretty difficult to see - so I think that DSSPs
> +assignment
> in this case, while liberal, is certainly acceptable.
I ha
On Nov 3, 2003, at 1:37 AM, Einat Sitbon wrote:
Several questions regarding pymol on macs.
1)I'm using a G3. will version 0.93 work on it as the 0.90 version
does?
It should. I'm still waiting for 0.93 to be released via fink, because
my compiling skills are minimal.
2)The interface for ma
Warren -
Just up front I want to state that I don't think DSSP is the best possible
way to algorithmically determine secondary structure. My position is that
secondary structure is a subjective assignment anyway - so it will always be
open to interpretation. In that case, you are better off assi
Ben,
Granted -- and there are certain times when it makes sense for everyone
to be "wrong" in order to be consistent. But is this one such case? I
think not. If DSSP "helices" aren't actually helices, then of what use
is the standard? Neither the resulting statistics nor the cartoon
figures wi
Warren -
The advantage of using DSSP over another heuristic method, is that it is a
standard.
A DSSP helix is a DSSP helix everywhere, even if a crystallographer might
extend the end a bit.
Ben
--
Ben HitzExelixis
Computational Biology and Informatics
bh...@exel
Hi,
Several questions regarding pymol on macs.
1)I'm using a G3. will version 0.93 work on it as the 0.90 version does?
2)The interface for mac is .. well.. very uncomfortable. Is there a chance
of improvement soon?
3)In fink there is only version 0.86 of pymol. At least as much as I can
see. Is
Hi Warren,
I spotted this a while ago but thought I was just doing it wrong
On my system, RHL8.0 with with commercial xig.com summit Xserver for
hardware stereo,
when I try to do what is described below,
in 3 button editing,
ctrl middle click on an atom,
no white sphere appears on the ato
