Bartholomeus,
Your question seems to be essentially the same as one asked on the ccp4bb
last year. Here is the answer to that question.
Re: [ccp4bb]: Waters!
To: r...@poori.biochem.uiowa.edu
Subject: Re: [ccp
Bartholemeus,
No, there isn't any way to do this directly with the selection
language. The closest you can get is to simply select the waters in
proximity to protein atoms.
select close_waters, hoh/ within 3.1 of not hoh/
You could then use some external tool to calculate the SASA of
The safe answer is "no".
In truth, it is possible to get some information through the Wizard
mechanism, but the approach is complex, undocumented, and likely to
change.
you want to use PyMOL as a front-end for PyOpenGL, the development work
to support this hasn't yet been done. Sorry.
Cheers
Yibin,
show sticks, (not name c,n,o)
show cartoon
set cartoon_smooth_loops, 0
and perhaps
set cartoon_flat_sheets, 0
Cheers,
Warren
--
mailto:war...@delanoscientific.com
Warren L. DeLano
Principal
DeLano Scientific LLC
Voice (650)-346-1154
Fax (650)-593-4020
-Original Message-
F
Dear All,
I want to show sticks for only side-chains (CA and beyond CA) of
selected residues in the cartoon mode. Is there an easy way to do that (
my way is to use SELECT followed by showing sc but mc atoms are still
displayed)?
Thank you very much in advance.
Regards
yibin
