[PyMOL] q: use 'create' from "fresh" loaded files, related to scrambled surfaces

2003-04-10 Thread Bartholomeus Kuettner
Hello fellows, this is not a real question since I found a workaround but I would like to know wether this is a bug in PyMOL or just the result of the Python selection algorithm. Well, the problem was arising by playing around with Mr. DeLanos example script to produce the contact surface of two

Re: [PyMOL] knobs on spheres

2003-04-10 Thread andRe ambrosio
hi, after generating spheres, try > hide nonbonded ok? andre ambrosio cbme/ifsc/usp - brazil Reiko Kagawa wrote: Hi everybody, When I ray-trace my ball-and-stick models, some knobs suddenly appear on a sphere that is sitting alone, not bonded to anything in the figure, hence turning int

Re: [PyMOL] knobs on spheres

2003-04-10 Thread Ezequiel Panepucci
Hi Reiko, I think you are also ray traycing the "nonbonded" representation of the atoms as well as the "nb_spheres". Try hide nonbonded, (selection that contains your "knobed" atoms) and then ray traycing again. Cheers, Zac On Thu, 10 Apr 2003, Reiko Kagawa wrote: > Hi everybo

[PyMOL] knobs on spheres

2003-04-10 Thread Reiko Kagawa
Hi everybody, When I ray-trace my ball-and-stick models, some knobs suddenly appear on a sphere that is sitting alone, not bonded to anything in the figure, hence turning into a shape that can no longer be called a perfect sphere! This was seen in all ball-and-stick models I produced and ray-