Re: [PyMOL] Different transparencies for isosurfaces

2003-04-08 Thread Christian Boehme
Warren, you are right, I just tried version 0.86 and it works. Previously I used 0.82. I am a always a bit slow regarding the change to a new version, because I have to (re)do code changes I made. Warren L. DeLano wrote: I think you have come across a bug in PyMOL, which was fixed i

[PyMOL] surface of protein

2003-04-08 Thread cheom-gil cheong
Dear all : When I tried to make surface figure, I saw holes on the surface. It seems that these holes were made by the water molecules on the protein surface. I want to show only the surface of the protein, not water molecules. Did anyone have same problem? Cheom-Gil Cheong, Ph.D. Research

[PyMOL] aligning

2003-04-08 Thread Lamoureux Jason
I recently tried aligning a movie object of a morph (with 32 states) to a single pdb and it seemed to work although I dont know what state of the movie it aligned to. I was wondering if you can specify which state you want to align to and what was aligned by default. Thanks Jason Lamoureux __