[PyMOL] Defining secondary structure

Hi all, I have a script that I wrote to define the secondary structure of my protein. For some strange reason when I run the script, pymol does not recognize he commands: Parsing-Error: missing required argument: selection PyMOL>alter A/361:366/, ss='L' Parsing-Error: missing required argument: s

[PyMOL] Secondary structure for superposed structures

Hi, I'm a very new pymol user so bear with me if I've missed something obvious. I want to get nice cartoon representations of superposed structures - I obtained the rTools (from http://www.rubor.de/bioinf/pymol_rubor.html) as was mentioned previously on the mail-list and this is working fine

RE: [PyMOL] select residues 4 angstrom away from the center atom or residue

Certainly, For example: to create a selection "near145" consisting of all atoms within 4 A of residue 145: select near145, all within 4 of 145/ And to select complete residues: select near145, byres ( all within 4 of 145/ ) Cheers, Warren -- mailto:war...@sunesis.com Warren L. DeLano, Ph.D.

[PyMOL] select residues 4 angstrom away from the center atom or residue

Hi, I wonder if pymol can do this kind of selection. Thanks. Eric __ Do you Yahoo!? Yahoo! Web Hosting - establish your business online http://webhosting.yahoo.com