[PyMOL] black shadows and wipe-outs

2003-03-09 Thread Denis Shcherbakov
Hello all, Has anyone else experienced "blacking out" of parts of your stereo model as you turn it to certain angles? For me, if I have a box full of spheres and I start rotating it about, I get a few spheres "closest" to the viewer getting blackened out. I think it's a shadowing and/or lighting

Re: [PyMOL] Flat sheet cartoons that match CA coords ??

2003-03-09 Thread Warren L. DeLano
Hi Fred, Hmm...it's a testament to the power of the ribbon diagram that many people don't even know that beta sheets aren't really flat, but for purposes of illustration, we often distort reality. It can be done in PyMOL, but you'll need to put some manual effort into it. To do this in PyM

[PyMOL] Flat sheet cartoons that match CA coords ??

2003-03-09 Thread Fred Berkovitch
Hey Everyone, Has anyone figured out a way to have flat sheets enabled and *not* have any displayed sidechains floating off in space? I guess what it comes down to is having the cartoon follow the CA trace, even with flat sheets... -Fred