[PyMOL] protein surface

2003-02-24 Thread Jianghai Zhu
Hi, When I used "show surface, protein", what kind of surface did I generate? Molecualr surface, accessible surface (what is the probe radius?)? How can I define the type of surface I want and the probe radius? Besides generating the surface by itself, could pymol read other surface files? li

Re: [PyMOL] changing display during movie - mappend

2003-02-24 Thread Michael Ford
For some reason this command works in the console, but won't run inside a script - Why??? "Warren L. DeLano" wrote: > Mike, > > mappend 50:color yellow,ligand > > You'll want to restore the color at the beginning of the movie. > > Cheers, > Warren > > On Mon, 24 Feb 2003, Michael Ford wrote:

Re: [PyMOL] changing display during movie (mvSet??)

2003-02-24 Thread Warren L. DeLano
Mike, mappend 50:color yellow,ligand You'll want to restore the color at the beginning of the movie. Cheers, Warren On Mon, 24 Feb 2003, Michael Ford wrote: > > I want to change the display of my molecule during a movie. > > For instance, I might want to turn a ligand yellow at frame 50 of a 1

[PyMOL] changing display during movie (mvSet??)

2003-02-24 Thread Michael Ford
I want to change the display of my molecule during a movie. For instance, I might want to turn a ligand yellow at frame 50 of a 100 frame movie. How would I go about this? mvSet - can this be used for other pymol commands? I can use the mvRot and mvSinrot commands fine, but I want to do other t

Re: [PyMOL] spheres on a lattice - shadow?

2003-02-24 Thread Warren L. DeLano
On Mon, 24 Feb 2003, Denis Shcherbakov wrote: > > Hello, > > I think this is a ray-tracing or shadowing issue, and I'd like to find out > how to turn it off. I have a bunch of spheres on a lattice, and when you > turn the lattice a certain way - for example with a lattice corner out of > the plan