Re: [PyMOL] colouring by hydrophobicity

2003-01-23 Thread Luca Jovine
I was wondering if there is a way to colour by a structure by hydrophobicity. Hi Carly, This is a quick hack I wrote some time ago, but it kind of does the job... (of course I see much room for improvement!) # color_h # --- # PyMOL command to color protein molecules according to the Eise

RE: [PyMOL] Bug in selections

2003-01-23 Thread DeLano, Warren
Carsten, You're bumping up against a 63-character limit I currently have for any one individual argument in PyMOL's internal parser. Obviously I need to either safeguard that limitation to prevent a crash or eliminate it. You can still do this in a single selection, as follows select pock

[PyMOL] Bug in selections

2003-01-23 Thread Schubert, Carsten
Hi, there is a problem in pymol 0.86 under W2K using a long list of residues in a selection. When I use: select pocket = (P_338437 and (resi 16,17,18,19,54,55,57,58,59,60,61,62,67,72,73,74,75,82,86,91,93,95,96,97,99,1 00,103)) pymol generates an error and exits. Splitting the selection into 2

[PyMOL] colouring by hydrophobicity

2003-01-23 Thread chuitema
Hello, I was wondering if there is a way to colour by a structure by hydrophobicity. Carly