Eugen Leitl writes:
> It seems to be in everyone's interest to allow easy interoperation
> between the toolkits. However, in my experience it is a frustrating and
> difficult task, even for relatively simple tasks.
True.
> I believe that a common set of core modules is required. The most
Not
Kelley,
syntax is something like this:
set light, [ 0.0, 0.0, -1.0 ]
If you want to shine light directly from above I would give
set light, [ 0.0, -1.0, 0.0 ]
a shot. i.e. with a vector from [0,0,0] to [ 0.0, -1.0, 0.0 ], but that is
just a guess. I have not seen any documentation on h
Dear Pymolers,
After my last round question on lighting it became clear that the relevant
setting for positing the light source for the ray traced image was ³light².
There are three parameters to be set with the ³light² setting, but it is not
clear what each value refers to (is it X,Y,Z for the po
You can go to Settings - Edit all and change the vetor of the light ...
you may also want to increase direct -- light coming from camera shot or
ambient light.
Check out pg 32 and 33 in the online manual (Ray-Tracing section).
Do you know if I can add an additional light and how to do that?
Thank
Hi!
I think the comments below are right on the money.
I believe that a molecular modeling package powered by Python is a great idea,
particularly for those who would like to teach computational chemistry.
For example, many popular modeling packages allow the students to perform
simulations usin
Dear Pymolers,
I am sure this has been discussed previously but I can¹t find the response
anywhere. How do you alter the light settings to allow you to change the
direction of incoming light (and corresponding shadows). I am generating
images of a deep active site pocket in a slab view and I nee
Hi Kristl,
Use "ray renderer=1" instead of a simple "ray".
The raytracing will use Povray if well installed and create a pov file.
Hope that it helps
Cheers
Virgile
Is it possible to output a Pymol file that Povray can read using windows?
Also is it possible to add lights into a Pymol file?
Thanks,
Kristl
Hi again,
Ok, so the license is available at
http://www.bio.cam.ac.uk/nmr/ccp/project/about_ccpn/licensing/licensing.html
Unfortunately, this looks quite incompatible to the GPL:
(2) Conditions for DISTRIBUTION of SOFTWARE to MEMBERS
(2.1) An individual or ORGANISATION must be a MEMBER of
Jules Jacobsen wrote:
>
... stuff deleted
> The core of this program is the data model in which each atom in a
> molecule is defined. The next layer are the conversion scripts which take
> the molecule data from the model and pipe them out to whatever format is
> needed for the various data manipu
On Thu, Dec 12, 2002 at 10:33:47AM +, Jules Jacobsen wrote:
> I completely agree here, an integrated total platform would be immensely
> useful.
> I think that the problem is not necessarily all that far from a solution-
> currently there is a collaborative computing project for NMR (CCPN)
>
>
I completely agree here, an integrated total platform would be immensely
useful.
I think that the problem is not necessarily all that far from a solution-
currently there is a collaborative computing project for NMR (CCPN)
http://www.bio.cam.ac.uk/nmr/ccp/
The core of this program is the data mod
Dear Rajarshi Guha,
You could at least try to reconfigure Robert Campbell's Color-by-B-factor
script. It assigns each atom its own color according to another value.
http://www.rubor.de/bioinf/pymol_tips.html#bfac
Kristian
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