Re: [PyMOL] editing question

2002-11-19 Thread Warren L. DeLano
Michael, What's going on would become clear if you turned on valence display. Changing the name of a residue doesn't change the underlying chemical representation. Basically, you've got to change the location of the double bond in the histidine ring, or eliminate it in the case of charged his.

Re: [PyMOL] (no subject)

2002-11-19 Thread Kristian Rother
Fei Xu wrote: HI! Dr. Delano: Would you like to tell me how I can control the size of the ball, if I pick an atom and show it like a ball? Dear Fei Xu: 1. You select an atom 2. You display it as a ball 3. You type: set sphere_scale = 2.0 Here, the number is the size proportional to an origina

[PyMOL] (no subject)

2002-11-19 Thread Fei Xu
HI! Dr. Delano: Would you like to tell me how I can control the size of the ball, if I pick an atom and show it like a ball? Have a nice day! Fei