Re: [PyMOL] distance sequence output

2002-10-12 Thread Warren L. DeLano
Yuuki, I've glanced at the code and found that there's no way to get that information out directly right now. The dist command only returns the average distance drawn -- this is because a single distance command can be used to draw distances to many atoms. To accomplish your goal, you would n

[PyMOL] Phosphate trace for nucleic acids

2002-10-12 Thread Luca Jovine
>Question 1, CA-trace: > >show ribbon >set ribbon_sampling=1 > >(NOTE: requires all main chain atoms to be present, but not necessarily visible > -- CA-only models will be supported later on). (thanks Warren!!) ...and similarly, should you ever want to show the phosphate trace of a nucleic ac

[PyMOL] distance sequence output

2002-10-12 Thread Yuuki Komata
Hi all, I'm making sequenced pictures to be a movie. Each picture contains distance between atoms, and I can SEE them changing in the movie. Does someone know whether PyMol can output this sequenced atom distance to a file, and how? Normal text format will be O.K. Thanks a lot. Yuuki