RE: [PyMOL] moving one segment relative to the rest

2002-09-30 Thread DeLano, Warren
Shohei, The easiest way to do this is to split the objects and then use the rotate command. # save as a ".pml" file... load 1FJ1.pdb # split PDB file create anti=(chain F) create fab=(chain A,B) # delete original object delete 1FJ1 # color objects color green,fab color pink,anti # color

[PyMOL] moving one segment relative to the rest

2002-09-30 Thread Shohei Koide
Hello, I am wondering if one can move one segment (in my case, an antigen protein) relative to the rest of the complex (antibody) using PyMOL. So far I have only been able to translate/rotate the entire complex. I would like to manually "undock" the complex for an illustration purpose. Than

[PyMOL] RE: pyMol help (Ball & Sticks)

2002-09-30 Thread DeLano, Warren
From: George Nicola >I've tried several settings and commands but cannot figure out how to make >a simple ball-and-stick representation of a molecule. Can it be done in >Pymol? George, Yes, but it is non-obvious: hide lines show sticks show spheres set stick_radius=0.1 set sphere_scale=0.25

Antw: [PyMOL] Re: Stereo3D hardware recommendation

2002-09-30 Thread Manfred Baumstark
>>> Marc Saric 29.09.2002 18:28 >>> > Nuvision and Crystaleyes wireless glasses and emitters are > interchangeable. Be carefull! Unfortunately I had to find out that this only works in one way: Nuvission glasses do work with Nuvission and Stereographics emitters. But a Nuvission emitt