Yu,
The conformational editing features are not fully designed nor well
tested, and the documentation is still incomplete. Until the PyMOL user
interface is a bit more stabilized, documentation seems premature.
I am resistant to the idea of committing to a user interface which hasn't
really been
Hello everyone,
Does anyone know how to use the conformation editing of PyMol, or has it
been implemented? It's unclear from the menual, which just said that
"Sorry, no documentation yet -- these features won't be too useful until
PyMOL is coupled up with an energy minimiation engine." Any infomat
Hello there,
I plan to purchase a new graphics card and a pair of
stereo glasses to be used with PyMOL. My current
system: Dual Althlon 1900XP / 1GB DDR memory /
Geforce4 video card. Could anyone please give me some
suggestions/recommendations on the following
questions?
Because of the mono-perfo
Hi Jeremy,
If the proteins have significant homology, then you can use the align command:
align prot1ca,prot2
which will perform a sequence alignment of prot1 against prot2, and then an
optimizing fit using the CA positions. I'm not sure if the help text for align
got into 0.82, but the n
* Jeremy Craven [2002-09-26 09:59] wrote:
> 2) Anyhow, (and assuming that I might want to do alignments my own way
> anyhow),
> I created a script which read in an alignment and created a big long pair_fit
> command of the form
>
> pair_fit (tbr and resi 187 and name ca),(bs and resi 170 a
I have been trying to write a script to overlay two arbitrary proteins
via my own alignment and the 'pair_fit' command.
1) After running into the problem I described below I looked through the
pymol-users mailing list as hard as I could and found a statment that
such arbitrary alignment should be
