On Sat, 17 Aug 2002, Bartholomeus Kuettner wrote:
> Hello there!
>
> I followed mailing list instructions to create cgo based labels via a python
> script. Unfortunately, the labels are not in plane but more like
> perpendicular. So is there a way to alter the orientation of such cgo
> labels. I t
On 19 Aug 2002, Gareth Stockwell wrote:
>
> Dear PyMOL users,
>
> Does anybody know of a way to either
>
> i) Change the radius of a specified atom, or
alter (atom selection), vdw=radius
for example
alter (name ca),vdw=5
> ii) Make a CGO sphere semi-transparent?
Currently impossibleg (trans
On Tue, 20 Aug 2002, Peter C. McCluskey wrote:
> >The other thing I'd find useful is some molecular mechanics tools,
> >particularly energy minimization. Blending PyMOL with MMTK seems like a
> >good way to do this, since MMTK's license looks fairly liberal.
I think we're all of the same mind on
Dear Will,
You wrote:
The camera
movement I would like to do is a little more than simple rotations or
spirals, so it would be very helpful to me to be able to rotate about
an arbitrary vector, rather than just the principle axes, in mdo
commands. Is there a way to do this?
There is. The mov
dee...@iastate.edu (dee...@iastate.edu) writes:
>On Mon, Jul 29, 2002 at 01:12:40PM -0400, Nathaniel Echols wrote:
>
>> How hard would it be to incorporate the DSSP algorithm? I was looking at
>> the source for RasMol, which has a complete implementation. My feeling is
>> that this could be port
> The best way to avoid "derivative work" concern is to code in a "clean room"
> fashion, without reference to someone else's code. In principle, this could
> be done working from the original paper(s) that describe an algorithm.
I assume this is what authors of other packages have done in the pa
PyMOL folks,
I've been putting together movies of molecular trajectories on and off
all summer, and have found pymol to be great for this purpose. I now
need to put together something sexy for an end of the summer, and am
trying to make a movie with alot of camera panning. The camera
movement I wo
* dee...@iastate.edu [2002-08-20 07:03] wrote:
> On Sat, Aug 17, 2002 at 10:23:46PM +0200, Bartholomeus Kuettner wrote:
> > Hello there!
> >
> > I followed mailing list instructions to create cgo based labels via a python
> > script. Unfortunately, the labels are not in plane but more like
> > pe
On Mon, Jul 29, 2002 at 01:12:40PM -0400, Nathaniel Echols wrote:
> How hard would it be to incorporate the DSSP algorithm? I was looking at
> the source for RasMol, which has a complete implementation. My feeling is
> that this could be ported without too much misery. However, RasMol's
> licen
On Sat, Aug 17, 2002 at 10:23:46PM +0200, Bartholomeus Kuettner wrote:
> Hello there!
>
> I followed mailing list instructions to create cgo based labels via a python
> script. Unfortunately, the labels are not in plane but more like
> perpendicular. So is there a way to alter the orientation of s
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