[PyMOL] q: dash options, transparency, global setting vs.local settings

Dear all! I've encountered several questions while playing aroung with PyMOL. Maybe there is someone who could provide some help? 1. dash options It seems that all the "dash" settings (e.g. "dash_length", "dash_with", "dash_radius") are global modifiers and cannot be assigned to specific interac

[PyMOL] Bug in Ray.c resulting in left-handed images with Povray

Hi folks, I found a bug in the povray output from PyMOL, when using the orthographic perspective (the perspective projection is ok): I had been playing around with using povray to make fancy images from PyMOL output, but I noticed (actually somebody else did, I was too busy admiring the special e

[PyMOL] Segmentation Fault

Dear PyMOL Users, This may have been answered before but I haven't found the answer yet. I have a script that has to iterate over a very large selection of atoms and when it runs it comes to a point where pymol shuts down and I recieve the message "Segmentation Fault" in my terminal window. I'

[PyMOL] manipulating maps

Hi, Could someone give me a hint on where to start when I want to manipulate electron density maps? Where is the class definition for the map class? -- Groeten, David. Dr. David van der Spoel,Biomedical center, De