Re: [PyMOL] Problem with Seleno-Cysteine

2002-08-07 Thread Jörg Johannes
Am Dienstag, 6. August 2002 18:33 schrieben Sie: > The problem is that, by default, PyMOL doesn't create ribbons for HETATMs > (typically ligands and solvent).  With the above command, you're converting > selenocysteine residues into regular atoms and sorting them into place so > that they can be i

[PyMOL] how do you retrieve stored data

2002-08-07 Thread Michael Tallhamer
I am new to pymol and I would like to retrieve residue id, name, atom name ...etc for a given selection to use in a wizard. The manual only states that the iterate command can access them but I don't know how to put them into variables in a wizard. Any suggestions would be greatly appreciated. T

Re: [PyMOL] secondary structure again

2002-08-07 Thread Kadmon
I made a mistake giving the URL in my last post, the correct DSSP page is now http://www.cmbi.kun.nl/gv/dssp/index.html Sorry for this. Virgile ADAM

Re: [PyMOL] secondary structure again

2002-08-07 Thread Kadmon
Dear Marco, you can find DSSP at http://www.embl-heidelberg.de/dssp/ or could prefer use Procheck from the CCP4 series (http://www.ccp4.ac.uk/) and run it on your pdb file by the "procheck [pdbfile] [chain number] [resolution]" command. You will obtain 10 postscript files in which you can find draw

[PyMOL] secondary structure again

2002-08-07 Thread Marco Fabbri
I have a problem to load secondary structure. I read the previous mail and I do not have DSSP. Any other way to load the secondary structure information into pymol? thank you marco