Dear Pymolers,
Well I asked about the possibility of supressing some output
from pymol earlier.
I'm so happy that I found something important.
In my case, what bothered me is that I have to do a lot of
selections and analyze the selected residues.
There are roughly 10,000 selection for each pdb f
OK, heres what we've got:
The DSSP program is available for Linux and Windows from
http://www.cmbi.kun.nl/swift/dssp/ .
I have written a Python script that parses the output of DSSP and alters
the annotation in PyMOL. You just start the script, then You have a
dssp
command available.
The s
> Ideally util.ss could become a shell that would know (from the environment?)
> if dssp or similar was installed, then either run dssp and parse the output
> to assign the ss, or else run the ss asignment code in the current util.ss if
> no other options were available.
I've basically done thi
Nat,
You read my mind. Having just converted the output of DSSP manually to PDB
records last week I was eyeing the source to util.ss wondering how to turn it
into a dssp parser.
Ideally util.ss could become a shell that would know (from the environment?)
if dssp or similar was installed, th
Dear Pymolers,
I am trying to manually superimpose a couple of structures that are
simultaneously opened in Pymol. I can't figure out how to move one structure
independent of the other. Is there a way to select just one object, move it
with the mouse, deselect it, select the other object, mov
> Yes, please. There are some structures that have to be generated by using
> symmetry operations defined in the "REMARK 350" lines in the pdb file
> (example:
> 1jjy.pdb). The only way (I know of, if you know a better one, please tell me)
> to
> do this is going to http://pqs.ebi.ac.uk where the
Le Sun, 28 July 2002, Nathaniel Echols a écrit
> but I'm working on making it more general. I suppose since I only use
> this for loading files into PyMOL, I could just write it in Python as a
> PyMOL module. . . would that be useful to anyone else?
Yes, please. There are some structures that h
Le Sun, 28 July 2002, Nathaniel Echols a écrit
> but I'm working on making it more general. I suppose since I only use
> this for loading files into PyMOL, I could just write it in Python as a
> PyMOL module. . . would that be useful to anyone else?
Yes, please. There are some structures that h
