Properly setting $Global::max_file_length to avoid line 12170 error

2022-10-04 Thread Nagle, Michael F
Hello, Thanks in advance to the developers and community. I'm a biologist who is not an expert in Linux and am dealing with a pretty rudimentary issue I haven't been able to solve. In short, I need to figure out the correct way to change $Global::max_file_length to avoid an error resulting fro

Re: Properly setting $Global::max_file_length to avoid line 12170 error

2022-10-04 Thread Rob Sargent
On 10/4/22 21:41, Nagle, Michael F wrote: Hello, Thanks in advance to the developers and community. I'm a biologist who is not an expert in Linux and am dealing with a pretty rudimentary issue I haven't been able to solve. In short, I need to figure out the correct way to change $Global::ma

Re: Properly setting $Global::max_file_length to avoid line 12170 error

2022-10-04 Thread Nagle, Michael F
Rob Sargent [This email originated from outside of OSU. Use caution with links and attachments.] The backslashes appear to be coming from parallel. My command has file paths with forward slashes and these are replaced with \_ by parallel, it seems. To demonstrate, here is one my first command in

Re: Properly setting $Global::max_file_length to avoid line 12170 error

2022-10-04 Thread Rob Sargent
On 10/4/22 22:33, Nagle, Michael F wrote: Rob Sargent [This email originated from outside of OSU. Use caution with links and attachments.] The backslashes appear to be coming from parallel. My command has file paths with forward slashes and these are replaced with \_ by parallel, it seems. T

Re: Properly setting $Global::max_file_length to avoid line 12170 error

2022-10-04 Thread Nagle, Michael F
No, I'm not using backslash continuation lines. I ctrl-F'd for backslashes and see none in my jobs file passed to parallel -a Please find attached that jobs file. Perhaps it could provide some clue. However, the same format and script used to prepare it worked in Ubuntu 20.04 LTS and it's only

Re: Properly setting $Global::max_file_length to avoid line 12170 error

2022-10-04 Thread Rob Sargent
On 10/4/22 23:12, Nagle, Michael F wrote: No, I'm not using backslash continuation lines. I ctrl-F'd for backslashes and see none in my jobs file passed to parallel -a Please find attached that jobs file. Perhaps it could provide some clue. However, the same format and script used to prepare i