Hi,
I have a large number database of molecules. In Open-babel (command line
version), I can optimize the geometry of molecules separately using UFF.
Question:
Is there a way to print the UFF parameters for each molecule in database, or
even potential formula of each term such as valence, bo
Hi,
I'm trying to install Open-babel locally without root access on Mac. However,
it fails and shows:
[ 87%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.o
/bin/sh: -c: line 0: syntax error near unexpected token `('
/bin/sh: -c: line 0: `cd "/Users/macbook/Dropbox
(GaTech)/Res
Hi,
I just want to make sure that I fully understand what a source code
src/forcefielduff.cpp is saying.
In 'void OBFFAngleCalculationUFF::Compute()', there is no content in case 2 and
case 4. Is the energy calculated by using the default form (sp3) for case 2 and
case 4, or not calculated a
Hi,
I have a problem with the ring detection using Open Babel 2.4.1. My goal is to
know which carbon atoms (or other element) of a molecule belong to a ring
structure. So far the method I tried is to grep the label 'TYPE: Car' in
.molreport file.
Successful case:
CC1=CC=CC=C1
The SMILE cod