[Open Babel] Unable to use plugindefines.txt (Group additivity)

2012-02-28 Thread Samuele Sommariva
I am trying to compute Entalpy of formation (of alkanes at this time) using group additivity. For the sake of argument, let's use normal-propane (CCC) I am currently running Open Babel 2.3.1 under win 7 >From what I have understood from the Open Babel documentation (paragraph 6.11 calculate TPSA) i

[Open Babel] R: Unable to use plugindefines.txt (Group additivity)

2012-03-01 Thread Samuele Sommariva
Boyle [mailto:baoille...@gmail.com] Inviato: giovedì 1 marzo 2012 05:43 A: Samuele Sommariva Cc: openbabel-disc...@lists.sf.net Oggetto: Re: [Open Babel] Unable to use plugindefines.txt (Group additivity) Hi Samuele, Yes - it's possible - I've just checked. Step 1 - Get the existing pluginde

[Open Babel] Smirks and tautomers (mesomers)

2012-03-26 Thread Samuele Sommariva
Hi everybody. I work with high temperature kinetic scheme, hence I have radicals going around. I am using one of the latest developer version (updated at the beginning of the month) on win7 home 64 bit. I need to assign a unique name to resonant radicals. In this example a primary radical with a c

[Open Babel] Wrong Smarts connectivity? (and thank you for all the previous helps)

2012-04-02 Thread Samuele Sommariva
I know radicals are not fully supported (correct valence is available only in the developer version), and I don't really know if I should fill a bug report or add a request for future release. My question: shouldn't the connectivity (in SMARTS X) be, by definition, lower than or equal to the valen

Re: [Open Babel] Smirks and tautomers (mesomers)

2012-04-02 Thread Samuele Sommariva
I had a pretty busy week. Thank you for your answer, and forgive my delay. Thank you for your answer; it actually help to partially tackle the problem: there was a problem in the SMARTS I wrote (even if I cannot "see" it) Since it is possible to transform groups for tautomers, it should be possibl