Re: [Open Babel] Official reference of SMILES

2019-11-06 Thread Scalfani, Vincent
Hi Peng, In addition to the Daylight documentation on SMILES, there is also OpenSMILES, which OpenBabel supports: http://opensmiles.org/ And IUPAC is in the early stages of building on OpenSMILES, with IUPAC SMILES+: https://github.com/IUPAC/IUPAC_SMILES_plus Vin -Original Message-

Re: [Open Babel] How to compute the Tanimoto coefficient calculation between two structures?

2019-11-06 Thread Peng Yu
What is the relationship between openbabel and rdkit? What is best fingerprint nowadays for the purpose of the method described in the paper that I mentioned? Thanks. On Wed, Nov 6, 2019 at 3:49 PM Francois Berenger wrote: > On 06/11/2019 08:34, Peng Yu wrote: > > Hi, > > > > Relating protein ph

[Open Babel] Error to load pybel

2019-11-06 Thread Peng Yu
Hi, I got the following error to load pybel in openbabel python module. Does anybody know what is wrong? Thanks. $ brew info open-babel open-babel: stable 3.0.0 (bottled), HEAD Chemical toolbox https://openbabel.org /usr/local/Cellar/open-babel/3.0.0 (328 files, 19.5MB) * Poured from bottle on