Re: [Open Babel] substructure search fails

2019-09-13 Thread Vaibhav Dixit
A follow-up question, Is it possible to extract coordinates (xyz) from these O, N atoms which are attached to one/two Hs using babel (lets say from a mol2/sdf file)? Or I need to use rdkit or custom python scripts for such tasks? thanks a lot. On Thu, Sep 12, 2019 at 11:14 AM Vaibhav Dixit wrote

Re: [Open Babel] substructure search fails

2019-09-13 Thread Geoffrey Hutchison
> Is it possible to extract coordinates (xyz) from these O, N atoms which are > attached to one/two Hs using babel (lets say from a mol2/sdf file)? Or I > need to use rdkit or custom python scripts for such tasks? While the babel command line offers a lot of features it obviously can't offer e