[Open Babel] (no subject)

2019-09-03 Thread Markus Grimm via OpenBabel-discuss
Dear all, I asked the following question already last Friday but unfortunately I did not receive any answer. I'm trying to generate .rxn files and/or a single .rdf file from several reaction smiles which are stored in a csv file. Can someone tell me how there is a way to achieve this via Pybel? O

[Open Babel] Generating .rxn or .rdf files from reaction smiles

2019-09-03 Thread Markus Grimm via OpenBabel-discuss
Dear all, I asked the following question already last Friday but unfortunately I did not receive any answer. I'm trying to generate .rxn files and/or a single .rdf file from several reaction smiles which are stored in a csv file. Can someone tell me how there is a way to achieve this via Pybel? O

Re: [Open Babel] [Rdkit-discuss] Generating .rxn and/or .rdf fiiles from reaction smiles

2019-09-03 Thread Markus Grimm via OpenBabel-discuss
Hey guys, I'm still trying to generate the .rxn files. Problem now is, that in my .rxn bond blocks I always have bonds labeld 6 instead of 1. So basically during the transformation to a .rxn file the function is not anymore sure if the bonds are aromatic or single bonds. I can fix this easily wit