Re: [Open Babel] calculate chemical descriptors from published paper

2019-05-13 Thread Noel O'Boyle
Hi Spencer, To count the number of ring systems, simply find a ring atom that you have not yet visited (OBAtom.IsInRing()) and floodfill through all of the adjacent ring atoms via bonds that are in a ring. That's ring system 1. Repeat to find additional ring systems. In the reference you point to

Re: [Open Babel] calculate chemical descriptors from published paper

2019-05-13 Thread Spencer Trinh
Hi Noel, Thanks for response. The paper didn't really mention the R/S configuration but their supplemental had it. Here is the first two rows of their supplemental dataset. CID SMILES MW N O XLogP HBD HBA RotB tPSA nStereo R S Lipitor 60823 CC(C)C1=C(C(=C(N1CC[C@H](C[C@H ](CC(=O)O)O)O)C2=CC=C(C=