[Open Babel] Java bindings undefined symbol: _ZTVN9OpenBabel30OBMinimizingRMSDConformerScoreE

2018-07-16 Thread Vinothkumar Mohanakrishnan
Dear OPenBabel Users I am using OpenBabel in my (Java) application and want to pack this application and use it in different operating systems like Windows, Linux, and MacOs. I have compiled JAVA bindings for OpenBabel using the command *sudo cmake /home/vin/openbabel2.4-DCMAKE_INSTALL_PR

[Open Babel] Open a large .rsmi (443 MB)

2018-07-16 Thread Mirko Hu
Hello, I am trying to open a large .rsmi file (443 MB) with Python (open babel library), but every time I try the script freezes. I have tried also to split the file through Open Babel software for Windows, but I could not do that. I need to go through the reactions contained in the file to s

Re: [Open Babel] Open a large .rsmi (443 MB)

2018-07-16 Thread Noel O'Boyle
Unfortunately, neither the current release nor development code can handle rsmi from Python. If you wish to do this, you should check out the branch referred to in the following pull request: https://github.com/openbabel/openbabel/pull/1836 Regards, - Noel On 16 July 2018 at 15:28, Mirko Hu wrot

[Open Babel] Confab conformer search for hydrogen

2018-07-16 Thread Tayeb Kakeshpour
Hi everyone, The confab conformer search has been a life saver for me. There is only a small but Important issue. Any help would be greatly appreciated. When I do conformer search on ethanol it finds no conformer for it simply because it ignores the CCOH as a rotatable bond. However, this becom