Re: [Open Babel] No substructure session in mol2 output

Hi, When I use Open Babel to transfer a pdb file to a mol2 file, there is no > @SUBSTRUCTURE tag in the output file. My question is exactly the > same as Yuri Pevzner's one > . However, > the thread was stopped after Pascal Muller's re

Re: [Open Babel] No substructure session in mol2 output

Well, I need the tag to convert the pdb format to pqr format by using pdb2pqr program. The PRODGR server gives me that tag. Should I manually add it to the mol2 file? It is: @SUBSTRUCTURE 1 AB11 Does Open Babel add hydrogen with the AMBER force field? Or you don't need force field to make a